J4_6UO1_028

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UO1_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1144

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6UO1|1|2a|G|142
6UO1|1|2a|A|143
6UO1|1|2a|G|144
*
6UO1|1|2a|C|178
6UO1|1|2a|A|179
6UO1|1|2a|U|180
6UO1|1|2a|G|181
6UO1|1|2a|U|182
6UO1|1|2a|G|183
*
6UO1|1|2a|C|194
6UO1|1|2a|A|195
6UO1|1|2a|A|196
6UO1|1|2a|A|197
6UO1|1|2a|G|198
*
6UO1|1|2a|C|219
6UO1|1|2a|G|220
6UO1|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20