J4_6UZ7_002
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6UZ7|1|2|A|622, 6UZ7|1|2|A|1025, 6UZ7|1|2|C|1027, 6UZ7|1|2|U|1028, 6UZ7|1|2|A|1029, 6UZ7|1|2|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6UZ7_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1214
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.2
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
6UZ7|1|2|A|621
6UZ7|1|2|A|622
6UZ7|1|2|G|623
*
6UZ7|1|2|C|974
6UZ7|1|2|G|975
6UZ7|1|2|A|976
6UZ7|1|2|A|977
6UZ7|1|2|A|978
6UZ7|1|2|G|979
*
6UZ7|1|2|C|1020
6UZ7|1|2|C|1021
6UZ7|1|2|A|1022
6UZ7|1|2|U|1023
6UZ7|1|2|A|1024
6UZ7|1|2|A|1025
6UZ7|1|2|A|1026
6UZ7|1|2|C|1027
6UZ7|1|2|U|1028
6UZ7|1|2|A|1029
6UZ7|1|2|U|1030
6UZ7|1|2|G|1031
*
6UZ7|1|2|U|1102
6UZ7|1|2|U|1103
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bn
- 60S ribosomal protein L41
- Chain L
- KLLA0A10483p
- Chain N
- KLLA0F18040p
- Chain O
- 40S ribosomal protein S14
- Chain W
- 40S ribosomal protein S22
- Chain X
- RPS23
- Chain a
- 40S ribosomal protein S26
Coloring options: