J4_6V39_015
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CGAAG*UUAAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6V39|1|AN1|A|2284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V39_015 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1243
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6V39|1|AN1|C|2281
6V39|1|AN1|G|2282
6V39|1|AN1|A|2283
6V39|1|AN1|A|2284
6V39|1|AN1|G|2285
*
6V39|1|AN1|U|2339
6V39|1|AN1|U|2340
6V39|1|AN1|A|2341
6V39|1|AN1|A|2342
6V39|1|AN1|C|2343
*
6V39|1|AN1|G|2366
6V39|1|AN1|G|2367
6V39|1|AN1|U|2368
*
6V39|1|AN1|A|2377
6V39|1|AN1|G|2378
6V39|1|AN1|G|2379
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain N
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L27
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