J4_6VWL_010

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWL_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0866

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VWL|1|2|A|1772
6VWL|1|2|A|1773
6VWL|1|2|C|1774
6VWL|1|2|U|1775
6VWL|1|2|G|1776
*
6VWL|1|2|C|1788
6VWL|1|2|A|1789
6VWL|1|2|C|1790
6VWL|1|2|A|1791
6VWL|1|2|G|1792
*
6VWL|1|2|U|1827
6VWL|1|2|G|1828
6VWL|1|2|A|1829
6VWL|1|2|C|1830
*
6VWL|1|2|G|1975
6VWL|1|2|U|1976
6VWL|1|2|A|1977
6VWL|1|2|A|1978
6VWL|1|2|U|1979

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2