J4_6VWM_010

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWM_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1041

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VWM|1|2|A|1772
6VWM|1|2|A|1773
6VWM|1|2|C|1774
6VWM|1|2|U|1775
6VWM|1|2|G|1776
*
6VWM|1|2|C|1788
6VWM|1|2|A|1789
6VWM|1|2|C|1790
6VWM|1|2|A|1791
6VWM|1|2|G|1792
*
6VWM|1|2|U|1827
6VWM|1|2|G|1828
6VWM|1|2|A|1829
6VWM|1|2|C|1830
*
6VWM|1|2|G|1975
6VWM|1|2|U|1976
6VWM|1|2|A|1977
6VWM|1|2|A|1978
6VWM|1|2|U|1979

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2