J4_6VWM_012
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6VWM|1|2|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VWM_012 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1147
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6VWM|1|2|C|2285
6VWM|1|2|G|2286
6VWM|1|2|A|2287
6VWM|1|2|A|2288
6VWM|1|2|G|2289
*
6VWM|1|2|U|2343
6VWM|1|2|U|2344
6VWM|1|2|G|2345
6VWM|1|2|A|2346
6VWM|1|2|C|2347
*
6VWM|1|2|G|2370
6VWM|1|2|G|2371
6VWM|1|2|U|2372
*
6VWM|1|2|A|2381
6VWM|1|2|G|2382
6VWM|1|2|G|2383
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain AB
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L18
- Chain U
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L33
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