J4_6VWN_001
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6VWN|1|1|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VWN_001 not in the Motif Atlas
- Homologous match to J4_5J7L_001
- Geometric discrepancy: 0.2458
- The information below is about J4_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VWN|1|1|G|115
6VWN|1|1|A|116
6VWN|1|1|G|117
6VWN|1|1|U|118
6VWN|1|1|A|119
6VWN|1|1|A|120
6VWN|1|1|U|121
6VWN|1|1|G|122
*
6VWN|1|1|U|239
6VWN|1|1|G|240
*
6VWN|1|1|C|286
6VWN|1|1|U|287
6VWN|1|1|A|288
6VWN|1|1|G|289
*
6VWN|1|1|C|311
6VWN|1|1|C|312
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain o
- 30S ribosomal protein S16
- Chain p
- 30S ribosomal protein S17
Coloring options: