J4_6VWN_002
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 6VWN|1|1|C|183, 6VWN|1|1|A|197
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VWN_002 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.2609
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6VWN|1|1|G|142
6VWN|1|1|A|143
6VWN|1|1|G|144
*
6VWN|1|1|C|178
6VWN|1|1|A|179
6VWN|1|1|U|180
6VWN|1|1|A|181
6VWN|1|1|A|182
6VWN|1|1|C|183
6VWN|1|1|G|184
*
6VWN|1|1|C|193
6VWN|1|1|C|194
6VWN|1|1|A|195
6VWN|1|1|A|196
6VWN|1|1|A|197
6VWN|1|1|G|198
*
6VWN|1|1|U|219
6VWN|1|1|G|220
6VWN|1|1|C|221
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain s
- 30S ribosomal protein S20
Coloring options: