3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
6VWN|1|2|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6VWN_004 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.2106
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6VWN|1|2|C|268
6VWN|1|2|C|269
*
6VWN|1|2|G|370
6VWN|1|2|A|371
6VWN|1|2|G|372
6VWN|1|2|U|373
6VWN|1|2|A|374
6VWN|1|2|G|375
*
6VWN|1|2|U|399
6VWN|1|2|G|400
6VWN|1|2|A|401
6VWN|1|2|A|402
6VWN|1|2|U|403
6VWN|1|2|A|404
6VWN|1|2|U|405
6VWN|1|2|G|406
*
6VWN|1|2|C|421
6VWN|1|2|A|422
6VWN|1|2|A|423
6VWN|1|2|G|424

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L9
Chain V
50S ribosomal protein L28

Coloring options:


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