J4_6VWN_013

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWN_013 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1015

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6VWN|1|2|G|2643
6VWN|1|2|G|2644
6VWN|1|2|G|2645
6VWN|1|2|C|2646
*
6VWN|1|2|G|2674
6VWN|1|2|A|2675
6VWN|1|2|C|2676
*
6VWN|1|2|G|2731
6VWN|1|2|G|2732
6VWN|1|2|A|2733
6VWN|1|2|A|2734
6VWN|1|2|G|2735
*
6VWN|1|2|U|2769
6VWN|1|2|G|2770
6VWN|1|2|C|2771

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain I

50S ribosomal protein L14