J4_6VYU_002
3D structure
- PDB id
- 6VYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6VYU|1|B|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VYU_002 not in the Motif Atlas
- Homologous match to J4_4V9Q_031
- Geometric discrepancy: 0.3942
- The information below is about J4_4V9Q_031
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6VYU|1|B|G|7
6VYU|1|B|U|8
6VYU|1|B|G|9
6VYU|1|B|G|10
*
6VYU|1|B|C|25
6VYU|1|B|G|26
6VYU|1|B|U|27
*
6VYU|1|B|A|43
6VYU|1|B|A|44
6VYU|1|B|G|45
6VYU|1|B|G|46
6VYU|1|B|U|47
6VYU|1|B|C|48
6VYU|1|B|G|49
*
6VYU|1|B|C|65
6VYU|1|B|C|66
Current chains
- Chain B
- E-site fMet-tRNA
Nearby chains
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- 30S ribosomal protein S13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 50S ribosomal protein L27
- Chain v
- 50S ribosomal protein L16
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