J4_6VYU_004

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VYU|1|D|C|183, 6VYU|1|D|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYU_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYU|1|D|G|142
6VYU|1|D|A|143
6VYU|1|D|G|144
*
6VYU|1|D|C|178
6VYU|1|D|A|179
6VYU|1|D|U|180
6VYU|1|D|A|181
6VYU|1|D|A|182
6VYU|1|D|C|183
6VYU|1|D|G|184
*
6VYU|1|D|C|193
6VYU|1|D|C|194
6VYU|1|D|A|195
6VYU|1|D|A|196
6VYU|1|D|A|197
6VYU|1|D|G|198
*
6VYU|1|D|U|219
6VYU|1|D|G|220
6VYU|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20