J4_6VYU_006

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VYU|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYU_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VYU|1|a|C|268
6VYU|1|a|C|269
*
6VYU|1|a|G|370
6VYU|1|a|A|371
6VYU|1|a|G|372
6VYU|1|a|U|373
6VYU|1|a|A|374
6VYU|1|a|G|375
*
6VYU|1|a|U|399
6VYU|1|a|G|400
6VYU|1|a|A|401
6VYU|1|a|A|402
6VYU|1|a|U|403
6VYU|1|a|A|404
6VYU|1|a|U|405
6VYU|1|a|G|406
*
6VYU|1|a|C|421
6VYU|1|a|A|422
6VYU|1|a|A|423
6VYU|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9