J4_6VYW_004

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VYW|1|D|C|183, 6VYW|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYW_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYW|1|D|G|142
6VYW|1|D|A|143
6VYW|1|D|G|144
*
6VYW|1|D|C|178
6VYW|1|D|A|179
6VYW|1|D|U|180
6VYW|1|D|A|181
6VYW|1|D|A|182
6VYW|1|D|C|183
6VYW|1|D|G|184
*
6VYW|1|D|C|193
6VYW|1|D|C|194
6VYW|1|D|A|195
6VYW|1|D|A|196
6VYW|1|D|A|197
6VYW|1|D|G|198
*
6VYW|1|D|U|219
6VYW|1|D|G|220
6VYW|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20