J4_6VYW_006

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VYW|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYW_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VYW|1|a|C|268
6VYW|1|a|C|269
*
6VYW|1|a|G|370
6VYW|1|a|A|371
6VYW|1|a|G|372
6VYW|1|a|U|373
6VYW|1|a|A|374
6VYW|1|a|G|375
*
6VYW|1|a|U|399
6VYW|1|a|G|400
6VYW|1|a|A|401
6VYW|1|a|A|402
6VYW|1|a|U|403
6VYW|1|a|A|404
6VYW|1|a|U|405
6VYW|1|a|G|406
*
6VYW|1|a|C|421
6VYW|1|a|A|422
6VYW|1|a|A|423
6VYW|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9