J4_6VYW_009

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6VYW|1|a|G|1271, 6VYW|1|a|A|1272, 6VYW|1|a|U|1273, 6VYW|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYW_009 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0572

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6VYW|1|a|C|1270
6VYW|1|a|G|1271
6VYW|1|a|A|1272
6VYW|1|a|U|1273
6VYW|1|a|A|1274
6VYW|1|a|A|1275
6VYW|1|a|A|1276
*
6VYW|1|a|U|1294
6VYW|1|a|C|1295
*
6VYW|1|a|G|1645
6VYW|1|a|C|1646
6VYW|1|a|U|1647
6VYW|1|a|U|1648
*
6VYW|1|a|A|2009
6VYW|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain w

50S ribosomal protein L17