J4_6VYX_001
3D structure
- PDB id
- 6VYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6VYX|1|A|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VYX_001 not in the Motif Atlas
- Homologous match to J4_4V9Q_031
- Geometric discrepancy: 0.3942
- The information below is about J4_4V9Q_031
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6VYX|1|A|G|7
6VYX|1|A|U|8
6VYX|1|A|G|9
6VYX|1|A|G|10
*
6VYX|1|A|C|25
6VYX|1|A|G|26
6VYX|1|A|U|27
*
6VYX|1|A|A|43
6VYX|1|A|A|44
6VYX|1|A|G|45
6VYX|1|A|G|46
6VYX|1|A|U|47
6VYX|1|A|C|48
6VYX|1|A|G|49
*
6VYX|1|A|C|65
6VYX|1|A|C|66
Current chains
- Chain A
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain M
- 30S ribosomal protein S7
- Chain k
- 50S ribosomal protein L33
Coloring options: