J4_6VYX_003

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6VYX|1|D|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYX_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1124

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6VYX|1|D|G|115
6VYX|1|D|A|116
6VYX|1|D|G|117
6VYX|1|D|U|118
6VYX|1|D|A|119
6VYX|1|D|A|120
6VYX|1|D|U|121
6VYX|1|D|G|122
*
6VYX|1|D|U|239
6VYX|1|D|G|240
*
6VYX|1|D|C|286
6VYX|1|D|U|287
6VYX|1|D|A|288
6VYX|1|D|G|289
*
6VYX|1|D|C|311
6VYX|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17