J4_6VYX_004

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VYX|1|D|C|183, 6VYX|1|D|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYX_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYX|1|D|G|142
6VYX|1|D|A|143
6VYX|1|D|G|144
*
6VYX|1|D|C|178
6VYX|1|D|A|179
6VYX|1|D|U|180
6VYX|1|D|A|181
6VYX|1|D|A|182
6VYX|1|D|C|183
6VYX|1|D|G|184
*
6VYX|1|D|C|193
6VYX|1|D|C|194
6VYX|1|D|A|195
6VYX|1|D|A|196
6VYX|1|D|A|197
6VYX|1|D|G|198
*
6VYX|1|D|U|219
6VYX|1|D|G|220
6VYX|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20