J4_6VYX_015

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYX_015 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0657

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6VYX|1|a|G|2643
6VYX|1|a|G|2644
6VYX|1|a|G|2645
6VYX|1|a|C|2646
*
6VYX|1|a|G|2674
6VYX|1|a|A|2675
6VYX|1|a|C|2676
*
6VYX|1|a|G|2731
6VYX|1|a|G|2732
6VYX|1|a|A|2733
6VYX|1|a|A|2734
6VYX|1|a|G|2735
*
6VYX|1|a|U|2769
6VYX|1|a|G|2770
6VYX|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain t

50S ribosomal protein L14