J4_6VYY_004

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VYY|1|D|C|183, 6VYY|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYY_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYY|1|D|G|142
6VYY|1|D|A|143
6VYY|1|D|G|144
*
6VYY|1|D|C|178
6VYY|1|D|A|179
6VYY|1|D|U|180
6VYY|1|D|A|181
6VYY|1|D|A|182
6VYY|1|D|C|183
6VYY|1|D|G|184
*
6VYY|1|D|C|193
6VYY|1|D|C|194
6VYY|1|D|A|195
6VYY|1|D|A|196
6VYY|1|D|A|197
6VYY|1|D|G|198
*
6VYY|1|D|U|219
6VYY|1|D|G|220
6VYY|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20