J4_6VYZ_006

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VYZ|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYZ_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VYZ|1|a|C|268
6VYZ|1|a|C|269
*
6VYZ|1|a|G|370
6VYZ|1|a|A|371
6VYZ|1|a|G|372
6VYZ|1|a|U|373
6VYZ|1|a|A|374
6VYZ|1|a|G|375
*
6VYZ|1|a|U|399
6VYZ|1|a|G|400
6VYZ|1|a|A|401
6VYZ|1|a|A|402
6VYZ|1|a|U|403
6VYZ|1|a|A|404
6VYZ|1|a|U|405
6VYZ|1|a|G|406
*
6VYZ|1|a|C|421
6VYZ|1|a|A|422
6VYZ|1|a|A|423
6VYZ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9