J4_6VZ3_003

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6VZ3|1|D|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ3_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1124

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6VZ3|1|D|G|115
6VZ3|1|D|A|116
6VZ3|1|D|G|117
6VZ3|1|D|U|118
6VZ3|1|D|A|119
6VZ3|1|D|A|120
6VZ3|1|D|U|121
6VZ3|1|D|G|122
*
6VZ3|1|D|U|239
6VZ3|1|D|G|240
*
6VZ3|1|D|C|286
6VZ3|1|D|U|287
6VZ3|1|D|A|288
6VZ3|1|D|G|289
*
6VZ3|1|D|C|311
6VZ3|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17