J4_6VZ3_004

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VZ3|1|D|C|183, 6VZ3|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ3_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VZ3|1|D|G|142
6VZ3|1|D|A|143
6VZ3|1|D|G|144
*
6VZ3|1|D|C|178
6VZ3|1|D|A|179
6VZ3|1|D|U|180
6VZ3|1|D|A|181
6VZ3|1|D|A|182
6VZ3|1|D|C|183
6VZ3|1|D|G|184
*
6VZ3|1|D|C|193
6VZ3|1|D|C|194
6VZ3|1|D|A|195
6VZ3|1|D|A|196
6VZ3|1|D|A|197
6VZ3|1|D|G|198
*
6VZ3|1|D|U|219
6VZ3|1|D|G|220
6VZ3|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20