J4_6VZ3_006

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VZ3|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ3_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VZ3|1|a|C|268
6VZ3|1|a|C|269
*
6VZ3|1|a|G|370
6VZ3|1|a|A|371
6VZ3|1|a|G|372
6VZ3|1|a|U|373
6VZ3|1|a|A|374
6VZ3|1|a|G|375
*
6VZ3|1|a|U|399
6VZ3|1|a|G|400
6VZ3|1|a|A|401
6VZ3|1|a|A|402
6VZ3|1|a|U|403
6VZ3|1|a|A|404
6VZ3|1|a|U|405
6VZ3|1|a|G|406
*
6VZ3|1|a|C|421
6VZ3|1|a|A|422
6VZ3|1|a|A|423
6VZ3|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9