J4_6VZ3_011

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6VZ3|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ3_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.061

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6VZ3|1|a|U|1313
6VZ3|1|a|C|1314
*
6VZ3|1|a|G|1338
6VZ3|1|a|G|1339
6VZ3|1|a|U|1340
6VZ3|1|a|G|1341
6VZ3|1|a|A|1342
6VZ3|1|a|G|1343
*
6VZ3|1|a|C|1404
6VZ3|1|a|U|1405
*
6VZ3|1|a|A|1597
6VZ3|1|a|A|1598
6VZ3|1|a|U|1599
6VZ3|1|a|C|1600
6VZ3|1|a|G|1601
6VZ3|1|a|U|1602
6VZ3|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23