J4_6VZ5_004

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VZ5|1|D|C|183, 6VZ5|1|D|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ5_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VZ5|1|D|G|142
6VZ5|1|D|A|143
6VZ5|1|D|G|144
*
6VZ5|1|D|C|178
6VZ5|1|D|A|179
6VZ5|1|D|U|180
6VZ5|1|D|A|181
6VZ5|1|D|A|182
6VZ5|1|D|C|183
6VZ5|1|D|G|184
*
6VZ5|1|D|C|193
6VZ5|1|D|C|194
6VZ5|1|D|A|195
6VZ5|1|D|A|196
6VZ5|1|D|A|197
6VZ5|1|D|G|198
*
6VZ5|1|D|U|219
6VZ5|1|D|G|220
6VZ5|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20