J4_6VZ5_006

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VZ5|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ5_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VZ5|1|a|C|268
6VZ5|1|a|C|269
*
6VZ5|1|a|G|370
6VZ5|1|a|A|371
6VZ5|1|a|G|372
6VZ5|1|a|U|373
6VZ5|1|a|A|374
6VZ5|1|a|G|375
*
6VZ5|1|a|U|399
6VZ5|1|a|G|400
6VZ5|1|a|A|401
6VZ5|1|a|A|402
6VZ5|1|a|U|403
6VZ5|1|a|A|404
6VZ5|1|a|U|405
6VZ5|1|a|G|406
*
6VZ5|1|a|C|421
6VZ5|1|a|A|422
6VZ5|1|a|A|423
6VZ5|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9