J4_6VZJ_013

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZJ_013 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0454

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VZJ|1|a|A|1772
6VZJ|1|a|A|1773
6VZJ|1|a|C|1774
6VZJ|1|a|U|1775
6VZJ|1|a|G|1776
*
6VZJ|1|a|C|1788
6VZJ|1|a|A|1789
6VZJ|1|a|C|1790
6VZJ|1|a|A|1791
6VZJ|1|a|G|1792
*
6VZJ|1|a|U|1827
6VZJ|1|a|G|1828
6VZJ|1|a|A|1829
6VZJ|1|a|C|1830
*
6VZJ|1|a|G|1975
6VZJ|1|a|U|1976
6VZJ|1|a|A|1977
6VZJ|1|a|A|1978
6VZJ|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2