J4_6W6L_001
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 6W6L|1|t|C|303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6W6L_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1496
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6W6L|1|t|C|111
6W6L|1|t|C|112
*
6W6L|1|t|G|272
6W6L|1|t|A|273
6W6L|1|t|G|274
6W6L|1|t|U|275
6W6L|1|t|C|276
6W6L|1|t|G|277
*
6W6L|1|t|C|298
6W6L|1|t|A|299
6W6L|1|t|A|300
6W6L|1|t|A|301
6W6L|1|t|G|302
6W6L|1|t|C|303
6W6L|1|t|G|304
*
6W6L|1|t|U|321
6W6L|1|t|A|322
6W6L|1|t|A|323
6W6L|1|t|G|324
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L13
- Chain O
- 60S ribosomal protein L15
- Chain i
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L36
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