J4_6W6L_014

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6W6L|1|t|U|3789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6W6L_014 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.14

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6W6L|1|t|C|3667
6W6L|1|t|U|3668
6W6L|1|t|G|3669
*
6W6L|1|t|C|3723
6W6L|1|t|G|3724
*
6W6L|1|t|C|3742
6W6L|1|t|U|3743
6W6L|1|t|U|3744
6W6L|1|t|A|3745
6W6L|1|t|A|3746
6W6L|1|t|G|3747
6W6L|1|t|G|3748
6W6L|1|t|U|3749
6W6L|1|t|A|3750
6W6L|1|t|G|3751
*
6W6L|1|t|U|3785
6W6L|1|t|G|3786
6W6L|1|t|A|3787
6W6L|1|t|A|3788
6W6L|1|t|U|3789
6W6L|1|t|G|3790

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain o

60S ribosomal protein L41