J4_6W6P_005

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6W6P|1|A|U|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6W6P_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1028

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

6W6P|1|A|G|1346
6W6P|1|A|U|1347
6W6P|1|A|U|1348
6W6P|1|A|U|1349
6W6P|1|A|C|1350
*
6W6P|1|A|G|1374
6W6P|1|A|G|1375
6W6P|1|A|U|1376
6W6P|1|A|U|1377
6W6P|1|A|A|1378
6W6P|1|A|G|1379
*
6W6P|1|A|C|1440
6W6P|1|A|C|1441
*
6W6P|1|A|G|1640
6W6P|1|A|C|1641
6W6P|1|A|C|1642
6W6P|1|A|C|1643
6W6P|1|A|G|1644
6W6P|1|A|U|1645
6W6P|1|A|A|1646
6W6P|1|A|C|1647

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain U

50S ribosomal protein L23