J4_6W6P_008
3D structure
- PDB id
- 6W6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MultiBody Refinement of 70S Ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAAG
- Length
- 21 nucleotides
- Bulged bases
- 6W6P|1|A|A|1985
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6W6P_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1264
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
6W6P|1|A|C|1847
6W6P|1|A|U|1848
6W6P|1|A|G|1849
*
6W6P|1|A|C|1919
6W6P|1|A|G|1920
*
6W6P|1|A|C|1938
6W6P|1|A|C|1939
6W6P|1|A|U|1940
6W6P|1|A|A|1941
6W6P|1|A|A|1942
6W6P|1|A|G|1943
6W6P|1|A|G|1944
6W6P|1|A|U|1945
6W6P|1|A|A|1946
6W6P|1|A|G|1947
*
6W6P|1|A|C|1981
6W6P|1|A|G|1982
6W6P|1|A|A|1983
6W6P|1|A|A|1984
6W6P|1|A|A|1985
6W6P|1|A|G|1986
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: