J4_6W77_001

3D structure

PDB id

6W77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactivated-high-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6W77|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6W77_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2671

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6W77|1|A|G|115
6W77|1|A|A|116
6W77|1|A|G|117
6W77|1|A|U|118
6W77|1|A|A|119
6W77|1|A|A|120
6W77|1|A|U|121
6W77|1|A|G|122
*
6W77|1|A|U|239
6W77|1|A|G|240
*
6W77|1|A|C|286
6W77|1|A|U|287
6W77|1|A|A|288
6W77|1|A|G|289
*
6W77|1|A|C|311
6W77|1|A|C|312

Current chains

Chain A

RNA (1519-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17