J4_6W7W_002

3D structure

PDB id

6W7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6W7W|1|2|C|183, 6W7W|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6W7W_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1573

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6W7W|1|2|G|142
6W7W|1|2|A|143
6W7W|1|2|G|144
*
6W7W|1|2|C|178
6W7W|1|2|A|179
6W7W|1|2|U|180
6W7W|1|2|A|181
6W7W|1|2|A|182
6W7W|1|2|C|183
6W7W|1|2|G|184
*
6W7W|1|2|C|193
6W7W|1|2|C|194
6W7W|1|2|A|195
6W7W|1|2|A|196
6W7W|1|2|A|197
6W7W|1|2|G|198
*
6W7W|1|2|U|219
6W7W|1|2|G|220
6W7W|1|2|C|221

Current chains

Chain 2

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S20