J4_6WD7_009

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

6WD7|1|1|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WD7_009 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1849

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

6WD7|1|1|C|2285
6WD7|1|1|G|2286
6WD7|1|1|A|2287
6WD7|1|1|A|2288
6WD7|1|1|G|2289
*
6WD7|1|1|U|2343
6WD7|1|1|U|2344
6WD7|1|1|G|2345
6WD7|1|1|A|2346
6WD7|1|1|C|2347
*
6WD7|1|1|G|2370
6WD7|1|1|G|2371
6WD7|1|1|U|2372
*
6WD7|1|1|A|2381
6WD7|1|1|G|2382
6WD7|1|1|G|2383

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35

Chain o

50S ribosomal protein L18

Chain w

50S ribosomal protein L27