J4_6WDB_001

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WDB|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDB_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1735

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WDB|1|1|C|268
6WDB|1|1|C|269
*
6WDB|1|1|G|370
6WDB|1|1|A|371
6WDB|1|1|G|372
6WDB|1|1|U|373
6WDB|1|1|A|374
6WDB|1|1|G|375
*
6WDB|1|1|U|399
6WDB|1|1|G|400
6WDB|1|1|A|401
6WDB|1|1|A|402
6WDB|1|1|U|403
6WDB|1|1|A|404
6WDB|1|1|U|405
6WDB|1|1|G|406
*
6WDB|1|1|C|421
6WDB|1|1|A|422
6WDB|1|1|A|423
6WDB|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28