J4_6WDC_001
3D structure
- PDB id
- 6WDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 6WDC|1|1|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDC_001 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.2027
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WDC|1|1|C|268
6WDC|1|1|C|269
*
6WDC|1|1|G|370
6WDC|1|1|A|371
6WDC|1|1|G|372
6WDC|1|1|U|373
6WDC|1|1|A|374
6WDC|1|1|G|375
*
6WDC|1|1|U|399
6WDC|1|1|G|400
6WDC|1|1|A|401
6WDC|1|1|A|402
6WDC|1|1|U|403
6WDC|1|1|A|404
6WDC|1|1|U|405
6WDC|1|1|G|406
*
6WDC|1|1|C|421
6WDC|1|1|A|422
6WDC|1|1|A|423
6WDC|1|1|G|424
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain g
- 50S ribosomal protein L9
- Chain x
- 50S ribosomal protein L28
Coloring options: