J4_6WDC_005

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6WDC|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDC_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.122

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDC|1|1|U|1313
6WDC|1|1|C|1314
*
6WDC|1|1|G|1338
6WDC|1|1|G|1339
6WDC|1|1|U|1340
6WDC|1|1|G|1341
6WDC|1|1|A|1342
6WDC|1|1|G|1343
*
6WDC|1|1|C|1404
6WDC|1|1|U|1405
*
6WDC|1|1|A|1597
6WDC|1|1|A|1598
6WDC|1|1|U|1599
6WDC|1|1|C|1600
6WDC|1|1|G|1601
6WDC|1|1|U|1602
6WDC|1|1|A|1603

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23