J4_6WDF_015

3D structure

PDB id

6WDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

6WDF|1|7|U|8, 6WDF|1|7|U|47, 6WDF|1|7|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDF_015 not in the Motif Atlas

Homologous match to J4_5WT1_002

Geometric discrepancy: 0.4285

The information below is about J4_5WT1_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_40477.1

Basepair signature

cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6WDF|1|7|A|7
6WDF|1|7|U|8
6WDF|1|7|A|9
6WDF|1|7|G|10
*
6WDF|1|7|C|25
6WDF|1|7|A|26
6WDF|1|7|G|27
*
6WDF|1|7|C|43
6WDF|1|7|G|44
6WDF|1|7|U|45
6WDF|1|7|G|46
6WDF|1|7|U|47
6WDF|1|7|C|48
6WDF|1|7|C|49
*
6WDF|1|7|G|65
6WDF|1|7|U|66

Current chains

Chain 7

tRNAPhe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA