J4_6WJS_001

3D structure

PDB id

6WJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGGGCAG*CGACC*GAC*GGAUGAGAG

Length

25 nucleotides

Bulged bases

6WJS|1|X|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WJS_001 not in the Motif Atlas

Homologous match to J4_3F2X_001

Geometric discrepancy: 0.2166

The information below is about J4_3F2X_001

Detailed Annotation

FMN riboswitch junction

Broad Annotation

No text annotation

Motif group

J4_70672.1

Basepair signature

cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6WJS|1|X|C|8
6WJS|1|X|G|9
6WJS|1|X|G|10
6WJS|1|X|G|11
6WJS|1|X|G|12
6WJS|1|X|C|13
6WJS|1|X|A|14
6WJS|1|X|G|15
*
6WJS|1|X|C|27
6WJS|1|X|G|28
6WJS|1|X|A|29
6WJS|1|X|C|30
6WJS|1|X|C|31
*
6WJS|1|X|G|84
6WJS|1|X|A|85
6WJS|1|X|C|86
*
6WJS|1|X|G|97
6WJS|1|X|G|98
6WJS|1|X|A|99
6WJS|1|X|U|100
6WJS|1|X|G|101
6WJS|1|X|A|102
6WJS|1|X|G|103
6WJS|1|X|A|104
6WJS|1|X|G|105

Current chains

Chain X

RNA (112-MER)

Nearby chains