J4_6WNT_001

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WNT|1|4|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNT_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1552

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|C|268
6WNT|1|4|C|269
*
6WNT|1|4|G|370
6WNT|1|4|A|371
6WNT|1|4|G|372
6WNT|1|4|U|373
6WNT|1|4|A|374
6WNT|1|4|G|375
*
6WNT|1|4|U|399
6WNT|1|4|G|400
6WNT|1|4|A|401
6WNT|1|4|A|402
6WNT|1|4|U|403
6WNT|1|4|A|404
6WNT|1|4|U|405
6WNT|1|4|G|406
*
6WNT|1|4|C|421
6WNT|1|4|A|422
6WNT|1|4|A|423
6WNT|1|4|G|424

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28