J4_6WNT_004

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6WNT|1|4|G|1469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNT_004 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.2082

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6WNT|1|4|G|1438
6WNT|1|4|G|1439
6WNT|1|4|U|1440
6WNT|1|4|U|1441
6WNT|1|4|C|1442
*
6WNT|1|4|G|1466
6WNT|1|4|G|1467
6WNT|1|4|U|1468
6WNT|1|4|G|1469
6WNT|1|4|A|1470
6WNT|1|4|G|1471
*
6WNT|1|4|C|1532
6WNT|1|4|U|1533
*
6WNT|1|4|A|1725
6WNT|1|4|A|1726
6WNT|1|4|U|1727
6WNT|1|4|C|1728
6WNT|1|4|G|1729
6WNT|1|4|U|1730
6WNT|1|4|A|1731
6WNT|1|4|C|1732

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23