J4_6WNV_012
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6WNV|1|4|A|2416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WNV_012 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1492
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6WNV|1|4|C|2413
6WNV|1|4|G|2414
6WNV|1|4|A|2415
6WNV|1|4|A|2416
6WNV|1|4|G|2417
*
6WNV|1|4|U|2471
6WNV|1|4|U|2472
6WNV|1|4|G|2473
6WNV|1|4|A|2474
6WNV|1|4|C|2475
*
6WNV|1|4|G|2498
6WNV|1|4|G|2499
6WNV|1|4|U|2500
*
6WNV|1|4|A|2509
6WNV|1|4|G|2510
6WNV|1|4|G|2511
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain o
- 50S ribosomal protein L18
- Chain w
- 50S ribosomal protein L27
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