J4_6WNW_010

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNW_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.073

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WNW|1|4|A|1900
6WNW|1|4|A|1901
6WNW|1|4|C|1902
6WNW|1|4|U|1903
6WNW|1|4|G|1904
*
6WNW|1|4|C|1916
6WNW|1|4|A|1917
6WNW|1|4|C|1918
6WNW|1|4|A|1919
6WNW|1|4|G|1920
*
6WNW|1|4|U|1955
6WNW|1|4|G|1956
6WNW|1|4|A|1957
6WNW|1|4|C|1958
*
6WNW|1|4|G|2103
6WNW|1|4|U|2104
6WNW|1|4|A|2105
6WNW|1|4|A|2106
6WNW|1|4|U|2107

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2