J4_6WOO_002

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

6WOO|1|2|A|622, 6WOO|1|2|A|1026, 6WOO|1|2|C|1028, 6WOO|1|2|U|1029, 6WOO|1|2|A|1030, 6WOO|1|2|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WOO_002 not in the Motif Atlas

Homologous match to J4_8C3A_022

Geometric discrepancy: 0.1061

The information below is about J4_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6WOO|1|2|A|621
6WOO|1|2|A|622
6WOO|1|2|G|623
*
6WOO|1|2|C|975
6WOO|1|2|G|976
6WOO|1|2|A|977
6WOO|1|2|A|978
6WOO|1|2|A|979
6WOO|1|2|G|980
*
6WOO|1|2|C|1021
6WOO|1|2|C|1022
6WOO|1|2|A|1023
6WOO|1|2|U|1024
6WOO|1|2|A|1025
6WOO|1|2|A|1026
6WOO|1|2|A|1027
6WOO|1|2|C|1028
6WOO|1|2|U|1029
6WOO|1|2|A|1030
6WOO|1|2|U|1031
6WOO|1|2|G|1032
*
6WOO|1|2|U|1103
6WOO|1|2|U|1104

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain LL

uS17

Chain NN

uS15

Chain OO

uS11

Chain WW

uS8

Chain XX

uS12

Chain aa

eS26

Chain n

eL41