J4_6WOO_004
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 6WOO|1|5|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WOO_004 not in the Motif Atlas
- Homologous match to J4_8C3A_001
- Geometric discrepancy: 0.099
- The information below is about J4_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|U|112
6WOO|1|5|C|113
*
6WOO|1|5|G|267
6WOO|1|5|A|268
6WOO|1|5|G|269
6WOO|1|5|U|270
6WOO|1|5|C|271
6WOO|1|5|G|272
*
6WOO|1|5|C|293
6WOO|1|5|U|294
6WOO|1|5|A|295
6WOO|1|5|A|296
6WOO|1|5|G|297
6WOO|1|5|U|298
6WOO|1|5|G|299
*
6WOO|1|5|U|316
6WOO|1|5|A|317
6WOO|1|5|A|318
6WOO|1|5|A|319
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain h
- uL29
- Chain i
- eL36
Coloring options: