J4_6WOO_006
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6WOO|1|5|A|1452, 6WOO|1|5|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WOO_006 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1415
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|C|1451
6WOO|1|5|A|1452
6WOO|1|5|A|1453
6WOO|1|5|A|1454
6WOO|1|5|U|1455
6WOO|1|5|A|1456
6WOO|1|5|U|1457
*
6WOO|1|5|A|1475
6WOO|1|5|G|1476
*
6WOO|1|5|U|1877
6WOO|1|5|G|1878
6WOO|1|5|A|1879
6WOO|1|5|U|1880
*
6WOO|1|5|A|2352
6WOO|1|5|G|2353
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain P
- uL22
- Chain R
- eL19
- Chain d
- eL31
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