J4_6WOO_008

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUUAG*CC*GGUCGUA

Length

17 nucleotides

Bulged bases

6WOO|1|5|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|5|U|1495
6WOO|1|5|C|1496
*
6WOO|1|5|G|1520
6WOO|1|5|G|1521
6WOO|1|5|U|1522
6WOO|1|5|U|1523
6WOO|1|5|A|1524
6WOO|1|5|G|1525
*
6WOO|1|5|C|1614
6WOO|1|5|C|1615
*
6WOO|1|5|G|1829
6WOO|1|5|G|1830
6WOO|1|5|U|1831
6WOO|1|5|C|1832
6WOO|1|5|G|1833
6WOO|1|5|U|1834
6WOO|1|5|A|1835

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain R

eL19

Chain X

uL23

Chain g

eL34

Chain k

eL38

Chain l

eL39