J4_6WOO_009
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GG*CU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WOO_009 not in the Motif Atlas
- Homologous match to J4_8C3A_005
- Geometric discrepancy: 0.0814
- The information below is about J4_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|G|1674
6WOO|1|5|G|1675
*
6WOO|1|5|C|1693
6WOO|1|5|U|1694
*
6WOO|1|5|A|1752
6WOO|1|5|G|1753
*
6WOO|1|5|U|1772
6WOO|1|5|C|1773
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain U
- eL22
- Chain g
- eL34
- Chain k
- eL38
Coloring options: